Alternative Payments vs. QuickBooks Payments

Equip yourself with the best payment solution for MSPs and SMBs

In the fast-paced world of payments, having the most robust offering of payment capabilities and features can make all the difference in getting paid on time and is key providing an effective client experience.

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5.0

5.0

Q2 logo, white

4.7

4.7

versus

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4.5

4.5

Q2 logo, white

4.4

4.4

Trusted by 1,000+ service businesses nationwide

The numbers that matter

0%

Payment fees. Alternative Payments lets you pass that cost to clients.

$0

ACH with Alternative Payments

$2,340

Average monthly savings in processing fees after switching to Alternative Payments.

A payment solution that simplifies, not complicates

How we compare

Alternative Payments logo, black
  • Purpose Built for MSPs and their requirements
  • Advanced Automations for Optimization & Efficiency
  • End-Customer Facing Portal
  • Transparent, Clear Pricing
  • Modern User Interface & Experience
  • Customer Support



Elevate your payments experience with Alternative Payments

We provide unmatched customer success and support that empowers you and your clients to make use of our products to their fullest capacity.

Unparalleled Customer Success

Our commitment to your success ensures the full potential of Alternative Payments, with personalized onboarding and continuous support for you and your clients.

Customized Onboarding

Start with us today for a personalized onboarding. Collaborate with us to create a seamless, custom process aligned with your unique business needs.

Automated Payment Excellence

Partner with us for 100% online payment automation, enabling streamlined processes that empower your business and clients to thrive in the digital payment landscape.

Hassle-free payments for your business needs.
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Compare detailed insights

Alternative Payments logo, black

Tailored to MSP Requirements

Purpose-built for MSPs. We understand your requirements and have integrated seamlessly with all the leading PSAs.

Client-Focused Platform

We work hand-in-hand to activate your clients. We have a very unique value proposition that does not exist for others.

Automations

Payment automations is business critical. Automate 100% of your incoming payments with us today.

Transparent Pricing

Payment pricing is complicated. We make it simple and do not hide any surprises. One monthly flat-fee.

Streamlined User Interface

Compare our platform with QuickBooks Payments and you'll be amazed how easy our modern day UI is to use.

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QuickBooks Payments does not meet your technology and IT requirements.

Guest Checkout

QuickBooks Payments only offers guest checkout, which means your clients cannot continue to use the platform on a recurring basis.

No Automation

QuickBooks Payments does not support any sophisticated automation to help you take the manual processes out of payments.

Per-Transaction Pricing

QuickBooks Payments pricing is all per transaction, which is convoluted and challenging to digest.

Complicated Experience

QuickBooks Payments offers a complicated experience that is not intuitive, which is why your clients are not using it to pay online.

Seamless user interaction

Two payment cards side by side for comparison

Tailored to MSPs Needs + Requirements

Alternative Payments integrates seamlessly with top PSAs (ConnectWise, Autotask, HaloPSA), optimizing workflows for smoother and more efficient financial operations in MSPs.

Invoices list with two overdue invoices selected and send reminder, charge later, and charge now action bar

Client-Focused Platform

Maximize Alternative Payments with our unmatched support. Collaborate to boost activation and educate clients on online payments. Unlike larger enterprises, our unique value proposition sets us apart.

Auto-pay rule creation screen with days before due and outstanding amount conditions

Automations for Efficiency

Alternative Payments surpasses QuickBooks Payments in robust automation capabilities, including automated reminders, reconciliation, and auto-payments.

Pricing plans UI showing three tiers including a custom option

Cost-Effective Pricing

One flat monthly fee, no surprises. Unlike QuickBooks Payments, pass on credit card fees, reducing overhead costs. No charges for ACH payments, saving you more.

Atlantis Inc. payment screen showing amount due and payment method selection

Streamlined UI/UX

Our UI/UX is meticulously designed for user-friendliness. Modern, efficient, and highly user-centric, ensuring a pleasant experience for you and your clients.

Customer testimonial card from Bryant LaBonville, Director of Operations at Heiden Technology

Making payments your superpower

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Seamless workflows, fully managed

Native integrations with your accounting software and PSA. Including QuickBooks, Xero, Sage Intacct, ConnectWise, Autotask, and HaloPSA.

Payments and invoices into Sage

Centralizing operations into one fully service management system

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Frequently asked questions

Alternative Payments is a purpose-built platform for exactly that. It covers accounts receivable, accounts payable, and analytics in one subscription, with a branded client portal, automated collections, and PSA integrations that QuickBooks Payments doesn't offer. If you're already using QuickBooks for your books, Alternative Payments connects directly to it and handles the payment side far more cost-effectively.

QuickBooks Payments charges 2.99% on invoiced credit card transactions and 1% on ACH transactions, with no surcharging capability to pass those costs to clients. On a recurring MSP billing stack, those fees compound quickly. Alternative Payments includes built-in surcharging that lets you pass credit card fees to clients who pay by card compliantly and automatically, and ACH is free.

Yes. Alternative Payments connects directly to QuickBooks Online and QuickBooks Desktop with bidirectional sync. Invoices pull in automatically and payment statuses post back without manual entry. You keep QuickBooks as your accounting system of record. Alternative Payments just handles the payment collection side far more efficiently, with autopay, reminders, a branded client portal, and Collections Assist built in.

QuickBooks Payments is designed for general invoice collection. It doesn't support autopay rules by client or agreement type, automated reminder sequences, or PSA integrations that sync invoice data from ConnectWise, Autotask, HaloPSA, or SuperOps. For MSPs billing recurring contracts across a large client base, the manual work that QuickBooks Payments leaves behind adds up fast.

Yes. Because Alternative Payments integrates directly with QuickBooks, the transition doesn't disrupt your accounting setup. Your books stay in QuickBooks. You're just replacing the payment collection layer. Stored client payment methods are migrated in a PCI-compliant process so clients don't need to re-enter their details. Most MSPs are fully operational within a few days, with the Alternative Payments onboarding team handling setup from start to finish.

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Simplify your customer payments, unlock instant cash flow

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